German Chocolate Cupcakes

German chocolate cake cupcakes bring all the flavors of the classic layer cake into individual servings. The chocolate cupcakes have a tender crumb that pairs perfectly with the signature coconut-pecan filling. This isn’t overly sweet dessert – it’s balanced and rich without being overwhelming.

The coconut-pecan filling requires a bit of stovetop cooking, but it’s easy and worth the extra step. It’s sweet, buttery, and packed with texture. Paired with a smooth chocolate cream cheese frosting, these cupcakes hit every note.

To assemble, pipe a ring of frosting around the edge and spoon the coconut-pecan filling into the center. It looks great and makes sure you get all three components in every bite.

They store well in the fridge and taste great the next day once the flavors have had time to meld. This makes them a perfect make ahead dessert for parties or a crowd.

Let’s bake some homemade German Chocolate cupcakes! 

Close-up angled view of German chocolate cupcakes on a black plate, featuring rich chocolate frosting and a golden coconut-pecan topping

Ingredients

For the cupcakes:

  • 1 cup flour
  • ½ cup brown sugar
  • ½ cup sugar
  • ¼ cup cocoa powder
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • ½ teaspoon salt
  • ⅓ cup oil
  • ⅓ cup milk
  • 1 egg
  • 1 teaspoon vanilla
  • ⅓ cup water
  • ⅓ cup sour cream

For the German Chocolate frosting:

  • ½ cup evaporated milk
  • 2 egg yolks
  • ½ cup brown sugar
  • ¼ cup unsalted butter
  • 1 teaspoon vanilla
  • 1 cup sweetened shredded coconut
  • ¾ cup pecans

For chocolate frosting garnish:

  • ½ cup chocolate chips, melted
  • 6 tablespoons unsalted butter, softened
  • 3 oz cream cheese, softened
  • 1½ cups powdered sugar
  • ¼ cup cocoa powder
  • 1 tablespoon milk, if needed
Overhead view of small glass bowls filled with ingredients for German chocolate cupcakes, including butter, eggs, chocolate chips, shredded coconut, pecans, brown sugar, sweetened condensed milk, cocoa powder, and vanilla extract
Flat lay of German chocolate cupcake ingredients in glass bowls including brown sugar, flour, cocoa powder, milk, vegetable oil, sugar, vanilla extract, one egg, and sour cream on a white marble background

Steps to make German Chocolate Cupcakes

1. Preheat oven to 350 degrees. Line a couple standard muffin tins with cupcake liners and set aside.

2. In a stand mixer bowl, combine flour, sugar, brown sugar, baking soda, baking powder, salt and cocoa powder. Whisk to combine.

A saucepan filled with thick German chocolate filling, showing visible shredded coconut and chopped pecans in a golden caramel base

3. Add egg, oil, milk, vanilla, water and sour cream. Mix on low until combined. Scrape the sides often, then increase speed to medium for about 30 seconds to ensure it’s mixed well.

Mixing bowl with a chocolate cake mix base topped with a raw egg, sour cream, and other wet ingredients before being blended

4. Divide batter between cupcake liners, filling them about ½ full.

Smooth chocolate cupcake batter fully mixed and ready to be portioned

5. Bake in preheated oven for 14-16 minutes or until centers are set. Allow to cool completely before decorating.

Cupcake tray filled with paper liners and evenly poured chocolate batter, ready for baking

6. For the coconut pecan filling: In a large saucepan, combine evaporated milk, egg yolks, brown sugar and butter.

Saucepan containing butter, brown sugar, sweetened condensed milk, and egg yolks before cooking the German chocolate frosting

7. Heat over low until simmering, stirring frequently. Allow to simmer for about 2-3 minutes or until thickened.

8. Remove from heat and add vanilla, coconut and pecans. Stir to combine.

Overhead view of shredded coconut and chopped pecans added to the golden frosting base in a saucepan, ready to be mixed for traditional German chocolate cupcake topping

9. Allow to cool completely before decorating.

10. For the frosting: In a stand mixer bowl, combine softened butter and cream cheese until smooth.

Mixing bowl with softened butter and cream cheese, ready to be combined for the frosting base

11. Add powdered sugar and cocoa. Mix on low until combined. Increase speed to medium and whip for another minute.

Mixing bowl showing cocoa powder and powdered sugar piled over the creamed butter and cream cheese, about to be mixed for chocolate frosting

12. Add melted chocolate, cooled to room temperature, and mix to combine. Only if the frosting looks dry and crumbly can you add the tablespoon of milk, otherwise do not add any. You want the frosting thick, but not crumbly.

A mixing bowl of chocolate frosting with a generous dollop of melted chocolate added on top, ready to be blended in

13. Whip frosting for a minute on medium, scraping the side often, until smooth and fluffy.

A mixing bowl of chocolate frosting with a generous dollop of melted chocolate added on top, ready to be blended in

14. Transfer frosting to a piping bag fitted with a large star tip.

15. Once cupcakes are cool, pipe a spiral of frosting around the outside edge of each cupcake, leaving the center empty.

German chocolate cupcakes with the traditional coconut-pecan filling spooned into the center of chocolate buttercream frosting swirls

16. Spoon a dollop of coconut pecan filling into the center of each frosting ring on each cupcake, gently pressing to fill in the hole.

Flat lay of German chocolate cupcakes on a wire rack, showing off the glossy, textured coconut-pecan topping and piped frosting details

Storage: Cupcakes should be stored in an airtight container in the fridge for up to 3 days.

Close-up of frosted German chocolate cupcakes topped with a swirl of chocolate buttercream and a spoonful of coconut-pecan filling on black plates
Close-up angled view of German chocolate cupcakes on a black plate, featuring rich chocolate frosting and a golden coconut-pecan topping

German Chocolate Cupcakes

Yield: 16-20 cupcakes
Prep Time: 40 minutes
Cook Time: 16 minutes
Total Time: 56 minutes

Decadent German Chocolate Cupcakes topped with rich coconut-pecan frosting—perfect for chocolate lovers and special occasions! 🧁

Ingredients

For the cupcakes:

  • 1 cup flour
  • ½ cup brown sugar
  • ½ cup sugar
  • ¼ cup cocoa powder
  • 1 teaspoon baking powder
  • ½ teaspoon baking soda
  • ½ teaspoon salt
  • ⅓ cup oil
  • ⅓ cup milk
  • 1 egg
  • 1 teaspoon vanilla
  • ⅓ cup water
  • ⅓ cup sour cream

For the German Chocolate frosting:

  • ½ cup evaporated milk
  • 2 egg yolks
  • ½ cup brown sugar
  • ¼ cup unsalted butter
  • 1 teaspoon vanilla
  • 1 cup sweetened shredded coconut
  • ¾ cup pecans

For chocolate frosting garnish:

  • ½ cup chocolate chips, melted
  • 6 tablespoons unsalted butter, softened
  • 3 oz cream cheese, softened
  • 1½ cups powdered sugar
  • ¼ cup cocoa powder
  • 1 tablespoon milk, if needed

Instructions

  1. Preheat oven to 350 degrees. Line a couple standard muffin tins with cupcake liners and set aside.
  2. In a stand mixer bowl, combine flour, sugar, brown sugar, baking soda, baking powder, salt and cocoa powder. Whisk to combine.
  3. Add egg, oil, milk, vanilla, water and sour cream. Mix on low until combined. Scrape the sides often, then increase speed to medium for about 30 seconds to ensure it's mixed well.
  4. Divide batter between cupcake liners, filling them about ½ full.
  5. Bake in preheated oven for 14-16 minutes or until centers are set. Allow to cool completely before decorating.
  6. For the coconut pecan filling: In a large saucepan, combine evaporated milk, egg yolks, brown sugar and butter.
  7. Heat over low until simmering, stirring frequently. Allow to simmer for about 2-3 minutes or until thickened.
  8. Remove from heat and add vanilla, coconut and pecans. Stir to combine.
  9. Allow to cool completely before decorating.
  10. For the frosting: In a stand mixer bowl, combine softened butter and cream cheese until smooth.
  11. Add powdered sugar and cocoa. Mix on low until combined. Increase speed to medium and whip for another minute.
  12. Add melted chocolate, cooled to room temperature, and mix to combine. Only if the frosting looks dry and crumbly can you add the tablespoon of milk, otherwise do not add any. You want the frosting thick, but not crumbly.
  13. Whip frosting for a minute on medium, scraping the side often, until smooth and fluffy.
  14. Transfer frosting to a piping bag fitted with a large star tip.
  15. Once cupcakes are cool, pipe a spiral of frosting around the outside edge of each cupcake, leaving the center empty.
  16. Spoon a dollop of coconut pecan filling into the center of each frosting ring on each cupcake, gently pressing to fill in the hole.

Notes

Cupcakes should be stored in an airtight container in the fridge for up to 3 days.

Nutrition Information:
Yield: 20 Serving Size: 1
Amount Per Serving: Calories: 311Total Fat: 18gSaturated Fat: 8gTrans Fat: 0gUnsaturated Fat: 9gCholesterol: 52mgSodium: 153mgCarbohydrates: 35gFiber: 2gSugar: 27gProtein: 3g

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